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Quantum fluctuations in science, space and society, from quarks to Hubble and Mars. Served up by Alan Boyle, NBC News Digital science editor. E-mail Alan, or connect via Facebook, Twitter or Google+.

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  • 8
    Apr
    2011
    2:49pm, EDT

    Virtual whiskers have the touch

    BW Quist and R Faruqi / Northwestern University

    This is a view of the model whisker array built to explore how sensory and motor data are combined in the brain to create a perception.

    By John Roach, Contributing Writer, NBC News

    A virtual model of rat whiskers may help scientists unlock the mystery of how our brains turn the mechanics of touch into perceptions.

    "Our sense of touch is very mysterious. You can reach into your pocket or your purse and without even looking, you can identify your keys, a coin, or a paperclip," Mirta Hartmann, who studies sensory and neural systems engineering at Northwestern University, explained to me today.


    Her lab is using rat whiskers to understand how the brain goes from the mechanics of touch to a perception. "In the same way that we use our hands to go out and actively explore different objects, rats use their whiskers," Hartmann said.

    Whiskers are less complicated to study than the human hand, which has sensors all over. The response of the sensors depend on the viscoelasticity of the skin.

    Rat whiskers, by contrast, have senors only at the base. In addition, "rats cannot grasp with their whiskers, they can only explore. Our hand movements are complicated because we can grasp and manipulate objects, as well as tactually explore," Hartmann  noted.

    Whisker model
    She can colleagues studied the structure of the rat head and whisker array — 30 on each side of the face arranged in a regular pattern — to create their virtual model.

    Rats use these whiskers to whisk objects 5 to 25 times per second. This is different than cats or dogs, which also have whiskers but aren't able to "move them back and forth that much," Hartmann noted.

    The model allows the researchers to simulate the rat whisking against different objects and predict the full pattern of inputs into the whisker system as a rat encounters an object. These simulations can then be compared against real rat behavior.

    "It allows us to start to simulate what's going to happen as the rat comes up to an object and explores it with its whiskers," she said.

    Human touch
    This information, in turn, should lead to insights to what's going on in the human brain as the hand fishes around a pocket or purse.

    "There's just electricity in your brain and there's just mechanical signals on your hand. And somehow your brain is able to turn that contact pattern into electricity that generates a perception," Hartmann said. "That whole process is very mysterious. We need basic research to try and figure out how that happens."

    In addition, the research is being used to create robots with whiskers, which can use the motion of the whiskers to generate three-dimensional spatial representations of the environment. The technology could be used, for example, on robots designed to explore dark places.

    A paper describing the research was published Thursday online in Public Library of Science Computational Biology.

    More stories on whiskers and sense of touch:

    • Tomorrow's robots could have whiskers
    • How whiskers help rats find their way
    • Stretchy solar cells to power e-skin

    John Roach is a contributing writer for msnbc.com. Connect with the Cosmic Log community by hitting the "like" button on the Cosmic Log Facebook page or following msnbc.com's science editor, Alan Boyle, on Twitter (@b0yle).

    5 comments

    HELLO MY CHILDREN! IT'S GOD! Listen, you've all got it wrong. I should have known better than to let my sons and prophets bring you the message. They weren't supposed to leave you all guessing and worrying about me. You've been tugging at the curtain like Toto in The Wizard of Oz, trying to find o …

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  • 14
    Feb
    2011
    5:02pm, EST

    This is your brain on love

    James Lewis, West Virginia University

    When a person falls in love, a network of 12 regions of the brain are activated. The system is responsible for the emotion, reward, and intellectual stimulation of love.

    By John Roach, Contributing Writer, NBC News

    Love may be felt in our heart and stomach, but the act of falling in love is driven by 12 specific regions of the brain and, in fact, is intellectually stimulating, according to brain imaging research.

    "Your brain can be passionately in love before you know it," Stephanie Ortigue, an assistant professor psychology and neurology at Syracuse University in New York told me today.

    That's because we can't "feel" activation in our brains the same way we feel our heart rate speeding up or butterflies dancing in our stomach at the sight of our beloved. Instead, the unconscious brain sends a signal to the body that says "'Hey, there is something going on here,'" she said.


    These emotions can then feed back into the brain, generating a self-perpetuating cycle of love. In other words, love may be kick-started in the brain, but it's a two-way street between body and mind.

    "People always asks me, what falls in love, is it the heart or the brain," Ortigue said. "And I like to answer that it's the person who falls in love."

    Three brain systems
    By analyzing brain scans of people falling in love, she and colleagues found that 12 areas of the brain work in tandem to release dopamine, oxytocin, adrenaline and vasopressin — chemicals that are associated with pleasure, trust and sexual arousal.

    "It is a very specific network in the brain, and within this network we could say that there are three main systems that are activated," Ortigue said.

    The first system is emotional, but love is more than pure fleeting emotions that last for minutes. The second system is the motivational system, the system that is activated when you expect rewarding experiences. This same system is activated when under the influence of cocaine.

    "That's why some people believe that love is an addiction, because indeed love activates some areas of the brain that are involved in addiction," she noted.

    But there is more to love than emotion and addiction. It is also a complex mental process. "It is very intellectual in a way. We have a real concept of love," she said. As proof of the mental taxation of love, consider the drawn-out healing process it takes to mend a broken heart. (Or is it really a broken brain?)

    Soul minds?
    Earlier research showed that the cognitive areas of the brain stimulated by love are related to self-image, which may explain the expressions of finding a "soulmate" and one's "better half," Ortigue noted.

    This may also have implications for treating people who have a distorted self-image, or disorders such as anorexia. Treatment of the neurological self-image issues could lead to healthier relationships.

    "We all know that when love doesn't go well, everything goes wrong," she said.

    And on Valentine's Day, we all want to have that someone special to share a box of heart-shaped candy — or should that be brain-shaped candy instead?

    Ortigue chuckled at the suggestion, then steered our conversation away from the shape of candy to a re-casting of how we identify our beloved. "Instead of saying we are soulmates, maybe it would be great to say we are soul minds."

    You could try that line with your honey tonight, of one of these 14 other ways to find greater happiness in your love life.

    The brain imaging research appears in the Journal of Sexual Medicine.

    More stories on the science of love:

    • How your brain handles love and pain
    • Technology that makes the heart grow fonder
    • The science of love, lust and infatuation
    • Learnin' about lovin' from ... video games?
    • Interactive: A roadmap for your brain

    Check out this graphic from Scientific American for details on brain activation for romantic love and other flavors of affection.

    John Roach is a contributing writer for msnbc.com. Connect with the Cosmic Log community by hitting the "like" button on the Cosmic Log Facebook page or following msnbc.com's science editor, Alan Boyle, on Twitter (@b0yle).

    3 comments

    When I was a kid, I'd pester my parents and grandparents how dogs and cats knew how to be dogs and cats -- all those special behaviors they did. The answer was "instinct." I always wondered what instincts felt like, until I realized I knew all along.

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  • 20
    Jan
    2011
    2:07pm, EST

    How your brain picks the best move

    Wan et al. / Science / AAAS

    Functional MRI brain scans show activation in an area of the brain known as the precuneus, as exhibited here by a professional shogi player when presented with a board game pattern.

    By Alan Boyle, Science Editor, NBC News

    If you have a knack for knowing just the right move to make — in a board game or in other walks of life — it might be because your brain has built up a special kind of connection.

    Researchers at Japan's RIKEN Brain Science Institute report evidence that the professional players of a chesslike board game from Japan, known as shogi, have brains that crackle with activity in two areas that are less active in amateurs. Their findings are published in this week's issue of the journal Science.


    The activity was monitored using functional magnetic resonance imaging, or fMRI, while professionals and amateurs were shown pictures of shogi board patterns. Shogi is regarded as a game as cerebral and as tricky to master as chess — perhaps even more tricky, because players can add pieces captured from an opponent to their own side. The professionals were more adept at intuitively recognizing the "next best move" for a given pattern, but the really interesting part of this game had to do with what went on in their brains.

    Wan et al. / Science / AAAS

    This fMRI scan highlights activity in the caudate nucleus of a professional shogi player.

    The pros' brains showed more activity in the precuneus region of the parietal lobe, which has been linked to pattern recognition, as well as in the head of the caudate nucleus, deep within the brain. The caudate nucleus has been previously linked with cognitive functions, and game-playing in particular In fact, a different team of researchers reported last year that people who showed an aptitude for arcade games tended to have a bigger caudate nucleus (along with other structures) than less skilled players.

    The research team found that the precuneus-caudate connection showed up consistently when professionals were asked to come up with a rapid-fire choice of moves, but not as much for the amateurs. "These results suggest that the precuneus-caudate circuit implements the automatic, yet complicated, processes of board-pattern perception and next-move generation in board game experts," the researchers reported.

    Does this mean good gamers are born, not made? And do these results apply only to shogi players? In an e-mail interview, I asked one of the leaders of the research team, Keiji Tanaka, to discuss the findings in greater depth. Here's an edited Q&A:

    JNTO

    Shogi is a chesslike board game that is commonly played in Japan.

    Cosmic Log: Last year, I wrote about research from a team led by the University of Pittsburgh's Kirk Erickson that indicated a correlation between skill in playing an arcade-type video game and the relative volume of the caudate nucleus and putamen. This study seems to confirm the idea that structure of the caudate nucleus plays a role in game-playing proficiency … would you agree?

    Keiji Tanaka: Firstly, we measured the volume of caudate nucleus and compared the measure between professional and amateur players. There was no difference. Secondly, the game of Erickson et al. is largely sensory-motor, whereas board games are purely cognitive. There is thus little commonality between the two "games," although they are both called games. Thirdly, the learning examined in Erickson et al. took place within 24 hours. In our case, even the amateur players have spent many years learning the play, although their training is less extensive than that of professional players. The extent of learning is many orders different between our case and Erickson et al. Therefore, our results are not at all related to those of Erickson et al.

    Q: You and your colleagues suggest that expert players take advantage of neural connections between the precuneus and the caudate nucleus to recognize a game pattern quickly and intuitively arrive at a "next best move." Did you see evidence of a temporal progression, or was the experiment not designed to chart the flow of neural impulses in that way? Did you arrive at this hypothesis merely by considering the roles traditionally assigned to those areas of the brain

    A: There was significantly stronger positive correlation between precuneus activations and caudate activations during the quick-generation task in professional players, compared with correlations during other tasks in professional players, and compared with correlations during the quick generation task in amateur players. This is the evidence from our own experiments.

    Our results do not indicate the direction of signal flow (from the precuneus to the caudate or opposite).  The previous anatomical studies (in monkeys) showed that there are direct projections from the precuneus to the part of the caudate nucleus. Also, it has been shown that the precuneus has projections from the visual cortical areas in the occipital cortex, but the caudate nucleus does not have projections from the visual cortical areas. Based on these previous findings, we suggest that the signal flows from the precuneus to the caudate.

    Q: What further experiments are you planning to follow up on the suggestions raised in this paper?

    A: We are conducting a few follow-up experiments, but we would like to introduce them after we get results.

    Q: Are there implications for neuroscience beyond game-playing? For example, will learning about this particular process with Shogi shed light on the way in which experts in other fields (business, for example) make seemingly instinctual snap decisions about successful strategies in other scenarios?

    A: We assume that the same circuit (precuneus to caudate) is essential for other types of cognitive expertise — for example, chess, MRI reading by radiologists, solving troubles in computer networks, and auditing. However, we have no direct evidence. The research was supported by Fujitsu, which is one of the biggest computer companies in Japan. They want to get hints from our study about the best ways to educate system engineers who solve the troubles in computer networks. The engineers largely depend on intuition.

    Q: Are expert shogi-players born or made? Do your results suggest that proficiency at determining the "next best move" is an innate faculty, hard-wired into the brains of experts? Or could it be that experts have strengthened the neural connections for instinctive play through practice? Some of your results point to a correlation between caudate activity in amateurs and the speed with which they select the best move, which might suggest that some brains are naturally built to play shogi better. What’s your view on this "nature vs. nurture" aspect of game-playing proficiency?

    A: Our results do not give a direct answer to the nature-vs.-nurture question. However, previous psychological studies have shown that the expertise is specific to the domain. Chess players are super only in chess, MRI-reading experts are super only in MRI reading, and so on. Also, the psychological studies have shown that the development of expertise requires a long period of training, more than 10 years. These characteristics — domain specificity and the long period of learning that's required — are more consistent with the nurture idea: Expertise is the result of long, serious training.

    If that's not food for thought, I don't know what is. Feel free to cogitate over this research and add your comments below.

    More on brains and games:

    • Interactive: A road map for your brain
    • How playing games change your brain
    • Games ease trauma — but not just any game
    • Brain games don't make you smarter, study says

    In addition to Tanaka, authors of "The Neural Basis of Intuitive Best Next-Move Generation in Board Game Experts" include Xiaohong Wan, Hironori Nakatani, Kenichi Ueno, Takeshi Asamizuya and Kang Cheng. The work was supported by Fujitsu Laboratories and a grant-in-aid from Japan's Ministry of Education, Culture, Sports, Science and Technology. The Japan Shogi Association participated in the study.

    Connect with the Cosmic Log community by hitting the "like" button on the Cosmic Log Facebook page or following msnbc.com's science editor, Alan Boyle, on Twitter (@b0yle). Boyle has also written a book about Pluto as well as the past and present search for planets. To learn more, click your way to the website for "The Case for Pluto."

    13 comments

    Eric, your comments are longer than the article :p

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  • 6
    Jan
    2011
    7:43pm, EST

    Psychic proof? Skeptics strike back

    By Alan Boyle, Science Editor, NBC News

    A study laying out evidence of psychic precognition is catching lots of heat from critics, even before its publication in a peer-reviewed journal.

    We first told you about the study back in November: Daryl Bem, a psychology professor emeritus at Cornell University, summed up nine experiments he has conducted over the years into precognition — the idea that human behavior at a given moment can be influenced by information they're given at a later time. Bem's long-running experiments suggested that there was indeed a slight influence.

    Even in November, his 61-page paper was causing a stir because it was peer-reviewed and accepted for publication in the Journal of Personality and Social Psychology. Now that the publication date is nearing, the outcry from other researchers is rising. A report in today's New York Times says Bem's paper is "expected to prompt outrage."


    The University of Oregon's Ray Hyman, another emeritus professor of psychology who created a program called "The Skeptic's Toolbox" to teach critical thinking about paranormal reports, told the Times that "it's craziness, pure craziness."

    msnbc.com

    Click through an interactive guide to your brain's inner workings.

    "I can't believe a major journal is allowing this work in," Hyman was quoted as saying. "I think it's just an embarrassment for the entire field."

    Eric-Jan Wagenmakers, a psychologist at the University of Amsterdam, told the Times that Bem's research "should undergo more scrutiny before it is allowed to enter the field." Wagenmakers is a co-author of a rebuttal to the paper which is due to appear in the same issue of the journal.

    The critics cite the same rule of skepticism promulgated by the late astronomer Carl Sagan: "Extraordinary claims require extraordinary evidence." These folks say Bem's experiments may have yielded seeming evidence of psychic phenomena, or psi for short, but it's not extraordinary enough to meet the bar. They say it's just not statistically significant enough to allow for the conclusion that psychic powers exist. What's more, other scientists have had a hard time replicating Bem's results, as Scientific American's Michael Shermer noted in 2003.

    The journal's editors and reviewers were skeptical as well, but said they decided to go ahead with publication after looking closely at the data.

    ABC News' Ned Potter quoted this passage from an editorial due to be published in the journal: "We openly admit that the reported findings conflict with our own beliefs about causality and that we find them extremely puzzling. Yet, as editors we were guided by the conviction that this paper — as strange as the findings may be — should be evaluated just as any other manuscript on the basis of rigorous peer review."

    Will the psi really hit the fan when Bem's study finally appears in print? Or will it make a splash ... and then fade away inconclusively? What do you think? If you have some precognition about the outcome, share it as a comment below.


    Connect with the Cosmic Log community by "liking" the log's Facebook page or following @b0yle on Twitter. You can also check out "The Case for Pluto," my book about the controversial dwarf planet and the search for new worlds.

    194 comments

    Earl- the study wasn't about psychics, per se, but about the ability of the human mind to subconsciously allow for precognition. The participants were just regular folks, not crystal-ball swirling Edgar Cayce wannabes. I think the study is interesting on its own merits, and I find the adamant dismis …

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  • 29
    Oct
    2010
    6:15pm, EDT

    How your brain handles terror scares

    Jessica Rinaldi / Reuters

    A New York police officer stands at the scene of a suspected bomb contained in a UPS package at a bank in Brooklyn today.

    By Alan Boyle, Science Editor, NBC News

    Today's reports of suspicious packages sent from Yemen can add a real-life fear factor to the fictional scares that folks typically experience during Halloween weekend. Whether the scares are make-believe or real, neuroscience provides some strategies for channeling our fear response in the right way.

    Millions of years of evolution have optimized our brains' hard wiring to cope with immediate threats -- such as the predators that crossed paths with our ancestors in Africa, said Andreas Keil, a psychologist at the NIMH Center for the Study of Emotion and Attention at the University of Florida.

    "Today, we rarely experience the lions that want to eat us, or snakes that want to kill us ... but we respond a lot to cues where somebody tells us through a newspaper article or a Twitter tweet that a threat is around," Keil told me. "The brain's response to those cues is a lot like the response to the real thing."


    Acute vs. chronic stress
    Successfully coping with a stressful episode actually produces rewards in the brain, said Ki Ann Goosens, a neuroscientist at MIT's McGovern Institute for Brain Research who specializes in the study of fear, anxiety and stress. "It's good to be in a state of moderate arousal," she said. "That can actually enhance your ability to perform."

    In contrast, chronic stress is bad for the brain. "Unfortunately, there's less known about the effects of chronic stress," Goosens told me. "The effects that it has on the cells of the brain aren't uniform. For a lot of the cells in the brain, their function is impaired. You can cause atrophy of cells in the brain."

    One of the targets of chronic stress is the hippocampus, the area of the brain that plays a key role in managing memory. "You can imagine that if you have atrophy in this structure, often it's associated with memory impairment," Goosens said. But chronic stress actually causes the opposite response in a different part of the brain, known as the amygdala. Stress boosts activity in the amygdala.

    "You might think, 'Well, great, there's a part of my brain that's enhanced by chronic stress,'" Goosens said. "But it turns out that the amygdala is particularly involved in negative emotions, like fear. ... It's actually maladaptive, because you're better at processing bad things."

    Goosens' lab is focusing on the health effects of long-lasting stress -- effects that appear to range from cardiovascular disease to mental disorders.

    "If you're someone who's never been diagnosed with a mental illness, but you have a genetic predisposition for, let's say, bipolar disorder, and you experience a strong, lasting stressor -- for example, someone in your family dies -- then there's a higher likelihood that the illness would be triggered," she said. "Or if you're somebody who has been diagnosed, then you're more likely to start showing symptoms of mania or depression."

    Controlling the fear response
    So what does all this have to do with terrorism alerts? Our brains and our bodies are better-equipped to handle well-defined threats that come along with an action plan and a sense of resolution.

    "It's best to think about these fear episodes as networks that belong together in the brain," Keil said, "and one thing that goes with the fear response is to have an action plan. If I have no action plan, that will change the way the brain responds to the threat. ... The response is more unpleasant."

    That may be why so many people find scary movies and Halloween-style frights to be absolutely pleasurable. Such experiences let people experience the chemical high that goes along with the fear response, in a safe and controlled environment. In such a situation, it's easy to know what to do. "The action plan is to sit there and eat popcorn while the zombies are wreaking havoc," Keil said.

    In a way, the make-believe scares serve as "practice runs" for coping with real-life dangers -- and if they're handled in the right way, terrorism alerts can provide similar opportunities for visualizing how to deal with an immediate threat. "I get the benefit of the tickling of my fear system, but at all times I'm in control of my fear response," Keil said.

    The action plan is an important part of the process.

    "With a terror alert, what are you going to be doing?" Keil said. "When an alert doesn't come with a recommendation for what people shoud do, there's a vague fear that's less appropriate and less functional."

    Even if the authorities don't provide those recommendations, it's a good idea to take the opportunity to review your own personal emergency response plan. "That's so in line with common sense you don't even have to ask a brain scientist," Keil said.

    Goosens has another piece of common-sense advice: Don't fret alone. Being part of a group makes it easier to cope with fear -- whether it's stimulated by a visit to a haunted house or an actual terror threat. "That reduces your stress response while you're exposed to the threat, and when you're being social, you're activationg parts of your brain that are associated with reward," she said. "One of the things about people who are exposed to chronic stress is that they often exhibit social withdrawal or abnormal social interaction."

    Filling in the gaps
    Risk consultant David Ropeik -- a former msnbc.com contributor whose most recent book is titled "How Risky Is it, Really?" -- said that it's important for government officials and news media to fill in the gaps in information about a threat as fully as they can.

    "The psychological effect is called 'representativeness bias,'" he told me. "We take partial information, and when we don't have more, we fit that information itno the pattern that we already know and seems to make sense. Yemen? Ding-ding-ding-ding. Possibly explosive? Ding-ding-ding-ding. It's a mental shortcut that we use to make decisions about whether we're in danger."

    That effect meshes perfectly with our hard-wired response to perceived threats. Hundreds of thousands of years ago, the hominids who were careful about keeping their distance from an unknown creature usually fared better than those who blithely walked into the predator's lair. But if the information gaps aren't eventually filled in, there could be negative consequences, particularly in a modern global society.

    "If the pattern forms in our minds, that Muslims are dangerous and that chemicals are dangerous, and if we don't find out the truth about all that, then we're left with that pattern. Everything fits the pattern, so we have Islamophobia and all sorts of stereotypes," Ropeik said. "The government and the media need to take more responsibility for clarifying those scary circumstances that, down the road, turn out not to fit the pattern. Because the more we have a pattern in our mind, the more it binds us to irrational representativeness bias. And that's bad for our health."

    What do you think? Is the news a source of chronic stress? Do you feel as if the gaps in our information about terror threats are being closed? Is there a psychological benefit to putting real-world worries aside and watching "Saw 3D" instead? Feel free to weigh in with your comments below. 

    Halloween tales from the crypt:

    • 2002: Ghostly mysteries solved
    • 2003: Why we seek out an eek
    • 2004: Sharing your scares
    • 2005: Ghosts on the rise
    • 2006: Bring me your ghost stories!
    • 2007: The science of spooks
    • 2008: Chasing phantoms on film
    • 2008: The science of bloodsuckers
    • 2009: Seven ghoulish discoveries
    • 2010: TODAY celebrates Halloween 
    • 2010: Superstitions getting more common
    • Inside Science: Why we love to scare ourselves

    To learn more about the workings of the brain, check out our interactive "road map to the mind." Connect with the Cosmic Log community by "liking" the log's Facebook page or following @b0yle on Twitter. You can also check out "The Case for Pluto," Alan's book about the controversial dwarf planet and the search for new worlds.

    38 comments

    I fear our government more than the terrorists.

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  • 29
    Sep
    2010
    10:26pm, EDT

    How cheaper genomes fuel science

    NIEHS

    DNA's double helix encodes information that could have medical application.

    The cost of whole-genome sequencing is dropping like a rock, and that’s fueling a “renaissance of activity” for scientific sleuths tracking down the genetic causes of disease, a pioneer in the field says.

    Harvard geneticist George Church provided a status report on the genome market, and its implications for medical research, during this week's "Open Questions in Neuroscience" symposium in Seattle, sponsored by the Allen Institute for Brain Science. Church is not only a Harvard professor and research, but also the founder of the Knome commercial venture for genome-sequencing.

    Thanks to competition in the sequencing field, the price of decoding a complete human genome has been following an affordability curve that looks like Moore's Law on steroids. The cost of the federal Human Genome Project, which issued its first draft in 2000 and a complete genome sequence in 2003, was estimated at $2.7 billion in 1991 dollars. But that price tag has been falling by as much as an order of magnitude per year, and today the going rate for whole-genome sequencing is edging below $10,000 (counseling costs extra). The cost of materials — that is, the chemical reagents required to do the tests — is merely $1,000, Church said in June.

    That might suggest that the goal of the $1,000 genome could be achieved in the next year, but Church told me there might be a price plateau instead. In any case, the rapid price decline is reviving hopes that DNA tests can reveal which combinations of genes are linked to extreme or distinctive traits.

    Church pointed to the example of Charcot-Marie-Tooth syndrome, a disease that affects nerve function in the body's extremities. In March, researchers at the Baylor College of Medicine announced that they unraveled the genetic cause of the disease by sequencing the entire genome of a sufferer (who happened to be a Baylor geneticist) and comparing genetic mutations with those found in his parents and siblings. Another study at the Institute for Systems Biology concluded that no more than four genes were responsible for another rare disease known as Miller syndrome, thanks to whole-genome sequencing for a family of four.

    To accelerate the genomic renaissance, Church established the Personal Genome Project, which is aimed at producing a publicly available database of genome sequences linked to medical data. So far, 16,000 volunteers have signed up, and the project has the go-ahead to sign up as many as 100,000. But less than two dozen people have made their complete genome public. One reason for that is the concern over privacy. But Church told me the biggest reason why more people aren't already "Personal Genome Pioneers" is because of the cost. Sounds like that situation could change pretty darn quickly.

    "Open Questions in Neuroscience" also included presentations by:

    • Susumu Tonegawa, a Nobel-winning neurobiologist at the Massachusetts Institute of Technology who focuses on the genetic and chemical mechanisms that underlie learning and memory.
    • Stephen Smith, a physiologist at Stanford University whose lab explores the brain's microcircuitry and molecular architecture.
    • Olaf Sporns, a neuroscientist at Indiana University whose research centers on designing computational models of neural circuits.
    • Karel Svoboda, a biophysicist at Howard Hughes Medical Institute's Janelia Farm Research Campus who observes neurons at work within mouse brains.
    • Doris Tsao, a biologist at Caltech who concentrates on the brain mechanisms behind image recognition and 3-D perception.
    • Catherine Dulac, a Harvard biologist who studies the olfactory system as well as the processing of pheromone cues.

    Check out the full list of postings from the brain symposium. Join the Cosmic Log corps by signing up as my Facebook friend or hooking up via Twitter. And if you really want to be friendly, ask me about "The Case for Pluto."

    6 comments

    The book "Getting Back To The American Dream" talks about a project called "Minerva Medica". If getting the price down for a genome is important to healthcare it would likely happen quickly if that kind of project was actually of interest to politicians.

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  • 28
    Sep
    2010
    10:58pm, EDT

    How my brain got fried

    msnbc.com

    What makes the brain tick? Click through an online "road map" to the regions of the brain and their functions.

    Even software billionaire Paul Allen, who founded the Allen Institute for Brain Science with $100 million of his fortune, can take only so much neuroscience in one day.

    "You do suffer from a little mental overload at the end," he acknowledged after today's sessions at the "Open Questions in Neuroscience" symposium at Seattle's Experience Music Project and Science Fiction Museum. Allen compared the experience to drinking from the proverbial firehose.

    The gusher of information from 11 leading neuroscientists — including Allan Jones, the researcher who heads the Allen Institute — was bracing as well as brain-bending. Allen said he came away from the first day with a better appreciation of the brain's marvels. "It's incredibly complex and amazing and fascinating, and you could spend lifetime after lifetime trying to understand it," he told the journalists who gathered backstage.

    Among the afternoon's highlights:

    • Virtual reality is helping neuroscientists understand how fruit flies use their brains. No, we're not talking about building bug-sized VR helmets. Instead, Caltech's Michael Dickinson and his colleagues fix the flies to a stationary position inside an enclosed space, and then pipe in imagery as well as puffs of air to make them think they're flying. This technique allows researchers to wire up the flies and see how their little brains respond to stimuli."You allow the animal to play a little video game," Dickinson explained. His lab found that a fruit-fly brain cell involved in the visual detection of motion was active, even during a simulated turn. "The sensitivity of this neuron is like a switch while the animal is actually engaged in behavior," Dickinson said.

    Another researcher in Dickinson's lab, Andrew Straw, has set up a 11-camera tracking system known as "Flydra" to track the flight of fruit flies in an enclosed space. ("Flydra" is a clever reference to Hydra, the many-headed monster from Greek mythology.) Here's a YouTube video that shows Flydra in action:

    When you combine camera tracking with virtual reality, you can immerse wired-up flies in a VR world and watch how visual stimuli are translated into flying behavior. You can even study the social interaction between real flies and fruit-fly avatars —or "flyatars." Here's a video from Caltech's Peter Polidoro that shows fruit flies interacting with a fly-shaped speck of metal:

    Air-suspended balls have also been used to study how wired-up mice make their way through a VR environment. Dickinson said virtual reality and robotics could open up new frontiers for the study of brain function as well as social interaction, focusing on a whole host of freely walking, flying or swimming animals. "The technologies are beginning to emerge that allow us to do this in a rigorous way," he said.

    • The complexity of neural synapses parallels the complexity of brain structure, said Seth Grant of Britain's Wellcome Trust Sanger Institute. His Genes to Cognition initiative focuses on the molecular architecture behind the connections that bind one neuron to another. Based on comparisons of species at different points along the tree of life, Grant theorizes that there was a big bang in synapse complexity around 500 million to 600 million years ago. That implies that synapse complexity was "derived prior to the complex organization of the brain," and suggests that better biochemistry led to better brains. But Dickinson wondered whether it was really fair to claim that vertebrate brains were inherently better than the tiny but amazingly capable brain of a butterfly that can figure out how to make its way from Canada to Mexico without a map. If you evaluated brains on a pound-for-pound basis, who'd come out on top?

    • It takes just one neuron to recognize a celebrity, Caltech's Christoph Koch observed. At least that's the upshot of research that he and his colleagues conducted into the neuroscience of image recognition. The research made headlines five years ago, in part because there's a bit of sex appeal to the idea that our brains contain a "Halle Berry neuron" or a "Jennifer Aniston brain cell." Since then, the experiments have continued: It turns out that people can be trained to think about a particular celebrity — say, Marilyn Monroe or Josh Brolin — in such a way that the right neuron fires when the celeb's image flashes up on the screen, but not when a different celebrity is seen. For example, pictures of Halle Berry sparked the same neuron even when she was shown in her tight leather Catwoman costume and mask. The Halle Berry neuron didn't fire, however, when the researchers projected images of other women wearing tight leather suits. Koch said he and his colleagues had no trouble finding such images on the Internet. "There were actually quite a few," he quipped.

    • Monkeys can calculate statistics, said the University of Washington's Michael Shadlen. He and his colleagues have done extensive research with rhesus macaques, studying how the firing patterns for neurons in the lateral interparietal cortex correlate with the monkeys' ability to solve left-vs.-right puzzles. The researchers also posed more complex puzzles that required the monkeys to keep track of the comparative values of four shapes that flashed on the computer screen they were watching. Shadlen played videos that crackled with the sound of neuron firings as each shape was added to the screen. "What you're hearing is a single neuron that is effectively doing sums and differences," he said. Our brains probably digest information in the same way, weighing the pluses and minuses to arrive at a decision. "When we think about the associative cortex, we probably need to think about computations that would be natural to statisticians," Shadlen said.

    I don't know about you, but my neurons can barely do sums and differences after today's workout. I'll pass along additional reports from the "Open Questions in Neurobiology" symposium on Wednesday.


    Check out the full list of postings from the brain symposium. Join the Cosmic Log corps by signing up as my Facebook friend or hooking up via Twitter. And if you really want to be friendly, ask me about "The Case for Pluto."

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  • 28
    Sep
    2010
    6:10pm, EDT

    Explore the brain's hidden frontiers

    Watch on YouTube
    By Alan Boyle, Science Editor, NBC News

    The brain isn't just about neurons. Mark Ellisman, founder and director of the National Center for Microscopy and Imaging Research, says attention must also be paid to the glial cells, which actually outnumber neurons in the cerebral cortex.

    Glial cells help support the neurons, conduct chemical housekeeping functions — and play a helping role in the transmission of signals from one neuron to another. In the video above, which was created for the Whole Brain Catalog, a virtual camera gradually focuses in on a glial cell that guides two neurons to make a synaptic connection.

    "They're looking to hook up, looking for that hot axon in the street," Ellisman joked today during an afternoon session at the "Open Questions in Neuroscience" symposium in Seattle.

    In this scenario, the glial cell acts as a matchmaker to facilitate the construction of circuitry inside our head — for example, during the learning process. Ellisman said the protein that glial cells sprinkle onto neurons during this process, known as thrombospondin, is also linked to the wound-healing process. Which led to an observation with philosophical as well as biochemical implications.

    "You can think of the injuries of experience as the wounds the brain knows how to heal," he said.


    Stay tuned for more from the "Open Questions in Neuroscience" symposium, sponsored by the Allen Institute for Brain Science at the Experience Music Project and Science Fiction Museum. Join the Cosmic Log corps by signing up as my Facebook friend or hooking up via Twitter. And if you really want to be friendly, ask me about "The Case for Pluto."

    1 comment

    This is SO COOL I can't describe how it makes me feel when I think of forming a new synapse!!!  Maybe , if I had a few more, I could describe it...

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  • 28
    Sep
    2010
    4:53pm, EDT

    Do search engines drive thoughts?

    Let's see, who's sponsoring this conference? It's the guy who started out at Washington State University, then hooked up with this other guy from Harvard, and they started a software company ... oh yeah, billionaire Paul Allen. For a while there, it sounded as if Rutgers neuroscientist Gyorgy Buzsaki was having a senior moment. But he was actually making a point about the workings of the brain.

    During his talk at the "Open Questions in Neuroscience" symposium, presented in Seattle by the Allen Institute for Brain Science, Buzsaki discussed the role of the hippocampus, which he said serves as the brain's "search engine" for data stored in the neocortex.

    "You can do this 'search' in just 100 milliseconds," he told his audience at the Experience Music Project and Science Fiction Museum, which is also funded by Allen.

    Buzsaki's research focuses on how the brain does its search queries, over and over again, through electrical impulses known as theta oscillations. Though he didn't say it, I can imagine that those incessant waves of neural activity are what we build up into a stream of consciousness.

    "If you have a mechanism to present the past and the future, then you can determine the 'now,'" Buzsaki said.

    He and others theorize that the hippocampus' search algorithm originally developed to keep track of distances in the real world. As the brain became more complex, the same algorithm could be used to keep track of all the information that was building up in the gray matter. Could the hippocampus account for a lot of the mind's workings?b Right now, it's a mystery.

    "I think it's fair to say we know close to nothing [about] how these neurons are wired to each other," Buzsaki said.

    New tools, including the Allen Institute's brain atlases, could change that situation. Buzsaki doesn't think there are any conceptual obstacles to unraveling the hippocampus' secrets. "This is an issue of money only," one of his presentation slides read.

    Is it?


    Stay tuned for more from the "Open Questions in Neuroscience" symposium. Join the Cosmic Log corps by signing up as my Facebook friend or hooking up via Twitter. And if you really want to be friendly, ask me about "The Case for Pluto."

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  • 28
    Sep
    2010
    3:26pm, EDT

    How the mind's switches were built

    Nobel-winning biologist Sydney Brenner says "there are three important questions we have to answer if we want to understand biological complexity."

    How do genes work? How is that genetic information translated into cell types that work together? And how did the process get that way?

    During his talk at the "Open Questions in Neuroscience" symposium in Seattle today, Brenner outlined an example of how those questions might be addressed, with regard to eye function. "Cell types must be encoded in the genome in some way," he observed. He suggested that there are binary options on every step of that coding process to produce a cell that deviates from the default path.

    The difficult trick is to map that "decision space" into a time frame for development as well as a 3-D structure for the different cell types. Right now, scientists are just in the beginning stages of that cross-mapping challenge. But the process by which rods and cones are made for the retina hint that binary coding is the way it's done, Brenner said. He pointed out that some people suffer from a genetic malady that leaves their retinas without rods. It turns out that they lack a transcription factor known as NRL.

    "NRL is required to throw the switch," explained Brenner, a senior distinguished fellow at the Salk Institute for Biologicfal Studies. That coding switch could be one of the important factors in the machinery for making sure the right number of cells turn into rods. And its existence may suggest that the production of rods represents a departure from the "default path" for producing cones.

    "Once upon a time, I will declare, the eye started out as a row of photoreceptor cells that were sensitive to blue light," Brenner said. As time and evolution went on, more switches were added to the genetic gadgetry. And based on how jellyfish "see," that appears to be a plausible route for evolutionary development, Brenner noted.

    Those switches probably developed from snippets of DNA coding that were duplicated within the genome, and changed through eons of mutation and natural selection. Brenner suggested that the underpinnings of brain cell development could be traced by a close examination of those linked duplications, which he calls "krikologs."

    Is a book of genesis written in our genome? What do you think? Feel free to add your comments below.


    Stay tuned for more from the "Open Questions in Neuroscience" symposium, sponsored by the Allen Institute for Brain Science at Seattle's Experience Music Project and Science Fiction Museum. Join the Cosmic Log corps by signing up as my Facebook friend or hooking up via Twitter. And if you really want to be friendly, ask me about "The Case for Pluto."

    2 comments

    You can unlock the code. You can develop your abilities. Read "The Starlight Technique." www.starlight technique.com published on line FREE of charge. click on the website, you will see a painting. go to the bottom of the painting and click on "the book". It takes a moment to load it's in adobe  …

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  • 28
    Sep
    2010
    2:10pm, EDT

    Get set for next-gen brain probes

    New types of brain probes could literally shed a different light on the internal workings of the brain. That was the message delivered by Ed Boyden, a researcher at the MIT Media Lab, during today's "Open Questions in Neuroscience" symposium.

    Neuroscientists already have used photosensitive chemicals known as rhodopsins to monitor how neural circuitry works — just as geneticists use "glow-in-the-dark" genes as a way to monitor how traits are passed along from an organism to its progeny. Flash a light on a particular brain cell, and you can trace how that affects the chemical pathways leading from that cell.

    Boyden's idea would be to build probes based on optical fibers and waveguides that could be implanted into the brain, to light up an area of interest and map the circuitry. You could even light up multiple neural pathways by building tiny mirrors into the probes. The next step is to create arrays of those probes that could be wired onto the skull, like a small-scale pincushion.

    Or how about a wireless connection? Boyden said his lab has already developed software and wireless hardware to monitor multiple sets of brain implants. "One laptop can control 83 animals at once," Boyden said.

    Boyden told me that he and his colleagues will be providing further details about the prospects for next-generation brain implants in research that's currently under review. So stay tuned for more about these not-so-alien probes.


    Stay tuned for more from the "Open Questions in Neuroscience" symposium, sponsored by the Allen Institute for Brain Science at Seattle's Experience Music Project and Science Fiction Museum. Join the Cosmic Log corps by signing up as my Facebook friend or hooking up on Twitter. And if you really want to be friendly, ask me about "The Case for Pluto."

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  • 28
    Sep
    2010
    12:45pm, EDT

    Big questions about the brain

    msnbc.com

    What makes the brain tick? Click through our interactive explaining brain regions and their functions.

    How does the brain work? What's the connection between genes and neurons? How do you translate the electrical bits of brain activity into complex thoughts and emotion? How does consciousness arise? These are some of the big questions being touched upon today in Seattle at the Allen Institute for Brain Science's symposium on "Open Questions in Neuroscience."

    The institute was founded in 2001 by software billionaire Paul Allen to help generate the data required to fuel discoveries about the brain. Since then, more than 100 staff researchers have generated more than 1 quadrillion bytes of brain image data (OK, a petabyte). The images show sections of mouse brains (adult and developing) as well as primate brains and yes, human cadaver brains.

    "They have to be fresh," Allan Jones, the institute's chief executive officer, told the symposium during its opening session. "There's a lot of timing issues for the normal human brain."

    Atlases of the brain
    All that brain imagery has fed into a series of brain atlases, documenting how genetic data match up with functional areas of the brain. Thousands of researchers can use that publicly available database for their own work in neuroscience — and some of the leading researchers in the field are in Seattle this week for the symposium.

    I'll be filing quick updates from the symposium today, along with the occasional Twitter tweet, from my seat in an auditorium at the Experience Music Project and Science Fiction Museum — another institution that Allen established in Seattle. David Anderson, a neurobiologist at the California Institute of Technology, said that the setting was apt, considering how much was known about the correlations between basic brain chemistry and complex mental phenomena such, as the way we respond to music.

    "Our level of understanding of this process is such that any attempt to explain to explain it in mechanistic terms is really an exercise in science fiction," he joked.

    The circuitry of fear
    Nevertheless, Anderson and his colleagues are building up stores of science facts, in part by drawing upon the brain atlas database. For example, Anderson explained how his lab is unraveling the chemistry and biology behind fear, and its suppression. Scientists have known for a long time that an area deep within the brain, known as the amygdala, is somehow central in the fear response. But it's been difficult to tease out exactly how the amygdala's chemical circuitry works.

    "The results have become fuzzier rather than clearer," Anderson said.

    The Allen Institute's mouse brain atlas helped identify the different cells that composed the central area of the amygdala. Armed with such data, Anderson's team was able to trace the "microcircuits" that suppressed the expression of conditioned fear. Cells known as PKC-delta neurons play a key role, by sending out chemical signals to other cells and blocking the response.

    Figuring out how those cells interact with other types of neurons in the amygdala could eventually lead to the development of more targeted anti-anxiety drugs, Anderson said. Neuroscientists don't have the full story yet, but what they've learned so far is giving them confidence that the circuitry of fear will someday be untangled.


    Stay tuned for more from the "Open Questions in Neuroscience" symposium as the day goes on. Join the Cosmic Log corps by signing up as my Facebook friend or hooking up on Twitter. And if you really want to be friendly, ask me about "The Case for Pluto."

    5 comments

    This Is Your Brain, This Is Your Brain On Football I would love to have someone do an in depth study on my brain (or whats left of it). Dr Amen did a 3 day evaluation on me last October and stated he would rate me as 80% disabled due to my 9 NFL caused emergency VP Shunt brain surgeries since bei …

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